J4_4WQU_022

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_022 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.049

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|G|1772
4WQU|1|CA|A|1773
4WQU|1|CA|C|1774
4WQU|1|CA|U|1775
4WQU|1|CA|G|1776
*
4WQU|1|CA|C|1788
4WQU|1|CA|A|1789
4WQU|1|CA|C|1790
4WQU|1|CA|A|1791
4WQU|1|CA|G|1792
*
4WQU|1|CA|C|1827
4WQU|1|CA|G|1828
4WQU|1|CA|A|1829
4WQU|1|CA|C|1830
*
4WQU|1|CA|G|1975
4WQU|1|CA|U|1976
4WQU|1|CA|A|1977
4WQU|1|CA|A|1978
4WQU|1|CA|C|1979

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA