J4_4WQU_027

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WQU|1|DA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQU_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1034

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WQU|1|DA|G|142
4WQU|1|DA|A|143
4WQU|1|DA|G|144
*
4WQU|1|DA|C|178
4WQU|1|DA|A|179
4WQU|1|DA|U|180
4WQU|1|DA|G|181
4WQU|1|DA|U|182
4WQU|1|DA|G|183
*
4WQU|1|DA|C|194
4WQU|1|DA|A|195
4WQU|1|DA|A|196
4WQU|1|DA|A|197
4WQU|1|DA|G|198
*
4WQU|1|DA|C|219
4WQU|1|DA|G|220
4WQU|1|DA|C|221

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20