J4_4WQY_001

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQY|1|AA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0554

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WQY|1|AA|C|257
4WQY|1|AA|U|258
*
4WQY|1|AA|G|397
4WQY|1|AA|A|398
4WQY|1|AA|G|399
4WQY|1|AA|U|400
4WQY|1|AA|A|401
4WQY|1|AA|C|402
*
4WQY|1|AA|G|426
4WQY|1|AA|G|427
4WQY|1|AA|A|428
4WQY|1|AA|A|429
4WQY|1|AA|U|430
4WQY|1|AA|C|431
4WQY|1|AA|U|432
4WQY|1|AA|G|433
*
4WQY|1|AA|U|448
4WQY|1|AA|A|449
4WQY|1|AA|A|450
4WQY|1|AA|G|451

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28