J4_4WQY_004

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4WQY|1|AA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0596

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4WQY|1|AA|G|1356
4WQY|1|AA|G|1357
4WQY|1|AA|U|1358
4WQY|1|AA|U|1359
4WQY|1|AA|C|1360
*
4WQY|1|AA|G|1384
4WQY|1|AA|G|1385
4WQY|1|AA|U|1386
4WQY|1|AA|U|1387
4WQY|1|AA|A|1388
4WQY|1|AA|G|1389
*
4WQY|1|AA|C|1450
4WQY|1|AA|U|1451
*
4WQY|1|AA|A|1643
4WQY|1|AA|C|1644
4WQY|1|AA|C|1645
4WQY|1|AA|C|1646
4WQY|1|AA|G|1647
4WQY|1|AA|U|1648
4WQY|1|AA|A|1649
4WQY|1|AA|C|1650

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23