J4_4WQY_015

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WQY|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WQY_015 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0815

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4WQY|1|CA|C|268
4WQY|1|CA|U|269
*
4WQY|1|CA|G|370
4WQY|1|CA|A|371
4WQY|1|CA|G|372
4WQY|1|CA|U|373
4WQY|1|CA|A|374
4WQY|1|CA|C|375
*
4WQY|1|CA|G|399
4WQY|1|CA|G|400
4WQY|1|CA|A|401
4WQY|1|CA|A|402
4WQY|1|CA|U|403
4WQY|1|CA|C|404
4WQY|1|CA|U|405
4WQY|1|CA|G|406
*
4WQY|1|CA|U|421
4WQY|1|CA|A|422
4WQY|1|CA|A|423
4WQY|1|CA|G|424

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28