J4_4WRA_032

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WRA|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WRA_032 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.166

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WRA|1|13|G|142
4WRA|1|13|A|143
4WRA|1|13|G|144
*
4WRA|1|13|C|178
4WRA|1|13|A|179
4WRA|1|13|U|180
4WRA|1|13|G|181
4WRA|1|13|U|182
4WRA|1|13|G|183
*
4WRA|1|13|C|194
4WRA|1|13|A|195
4WRA|1|13|A|196
4WRA|1|13|A|197
4WRA|1|13|G|198
*
4WRA|1|13|C|219
4WRA|1|13|G|220
4WRA|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20