J4_4WSM_013

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_013 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1679

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4WSM|1|14|C|2285
4WSM|1|14|A|2286
4WSM|1|14|A|2287
4WSM|1|14|A|2288
4WSM|1|14|G|2289
*
4WSM|1|14|C|2343
4WSM|1|14|U|2344
4WSM|1|14|G|2345
4WSM|1|14|A|2346
4WSM|1|14|C|2347
*
4WSM|1|14|G|2370
4WSM|1|14|G|2371
4WSM|1|14|G|2372
*
4WSM|1|14|C|2381
4WSM|1|14|G|2382
4WSM|1|14|G|2383

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 65

50S ribosomal protein L18

Chain E5

50S ribosomal protein L27

Chain M5

50S ribosomal protein L35