3D structure

PDB id
4WSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WSM_024 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.058
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4WSM|1|1H|G|1772
4WSM|1|1H|A|1773
4WSM|1|1H|C|1774
4WSM|1|1H|U|1775
4WSM|1|1H|G|1776
*
4WSM|1|1H|C|1788
4WSM|1|1H|A|1789
4WSM|1|1H|C|1790
4WSM|1|1H|A|1791
4WSM|1|1H|G|1792
*
4WSM|1|1H|C|1827
4WSM|1|1H|G|1828
4WSM|1|1H|A|1829
4WSM|1|1H|C|1830
*
4WSM|1|1H|G|1975
4WSM|1|1H|U|1976
4WSM|1|1H|A|1977
4WSM|1|1H|A|1978
4WSM|1|1H|C|1979

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain 13
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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