J4_4WSM_024
3D structure
- PDB id
- 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4WSM_024 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.058
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WSM|1|1H|G|1772
4WSM|1|1H|A|1773
4WSM|1|1H|C|1774
4WSM|1|1H|U|1775
4WSM|1|1H|G|1776
*
4WSM|1|1H|C|1788
4WSM|1|1H|A|1789
4WSM|1|1H|C|1790
4WSM|1|1H|A|1791
4WSM|1|1H|G|1792
*
4WSM|1|1H|C|1827
4WSM|1|1H|G|1828
4WSM|1|1H|A|1829
4WSM|1|1H|C|1830
*
4WSM|1|1H|G|1975
4WSM|1|1H|U|1976
4WSM|1|1H|A|1977
4WSM|1|1H|A|1978
4WSM|1|1H|C|1979
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: