J4_4WSM_029

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4WSM|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WSM_029 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1543

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WSM|1|13|G|142
4WSM|1|13|A|143
4WSM|1|13|G|144
*
4WSM|1|13|C|178
4WSM|1|13|A|179
4WSM|1|13|U|180
4WSM|1|13|G|181
4WSM|1|13|U|182
4WSM|1|13|G|183
*
4WSM|1|13|C|194
4WSM|1|13|A|195
4WSM|1|13|A|196
4WSM|1|13|A|197
4WSM|1|13|G|198
*
4WSM|1|13|C|219
4WSM|1|13|G|220
4WSM|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20