J4_4WT1_011

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT1_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0595

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WT1|1|14|G|1772
4WT1|1|14|A|1773
4WT1|1|14|C|1774
4WT1|1|14|U|1775
4WT1|1|14|G|1776
*
4WT1|1|14|C|1788
4WT1|1|14|A|1789
4WT1|1|14|C|1790
4WT1|1|14|A|1791
4WT1|1|14|G|1792
*
4WT1|1|14|C|1827
4WT1|1|14|G|1828
4WT1|1|14|A|1829
4WT1|1|14|C|1830
*
4WT1|1|14|G|1975
4WT1|1|14|U|1976
4WT1|1|14|A|1977
4WT1|1|14|A|1978
4WT1|1|14|C|1979

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA