J4_4WT1_016

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT1_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1394

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WT1|1|1G|G|142
4WT1|1|1G|A|143
4WT1|1|1G|G|144
*
4WT1|1|1G|C|178
4WT1|1|1G|A|179
4WT1|1|1G|U|180
4WT1|1|1G|G|181
4WT1|1|1G|U|182
4WT1|1|1G|G|183
*
4WT1|1|1G|C|194
4WT1|1|1G|A|195
4WT1|1|1G|A|196
4WT1|1|1G|A|197
4WT1|1|1G|G|198
*
4WT1|1|1G|C|219
4WT1|1|1G|G|220
4WT1|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain BA

30S ribosomal protein S20