J4_4WT8_001

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4WT8|1|Ab|C|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0754

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WT8|1|Ab|G|109
4WT8|1|Ab|A|110
4WT8|1|Ab|G|111
4WT8|1|Ab|U|112
4WT8|1|Ab|A|113
4WT8|1|Ab|A|114
4WT8|1|Ab|C|115
4WT8|1|Ab|G|116
*
4WT8|1|Ab|U|235
4WT8|1|Ab|C|236
*
4WT8|1|Ab|G|282
4WT8|1|Ab|U|283
4WT8|1|Ab|A|284
4WT8|1|Ab|G|285
*
4WT8|1|Ab|C|307
4WT8|1|Ab|C|308

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AR

30S ribosomal protein S17