J4_4WT8_012

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

4WT8|1|C1|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_012 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.1955

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|C1|G|1489
4WT8|1|C1|A|1490
4WT8|1|C1|C|1491
*
4WT8|1|C1|G|1512
4WT8|1|C1|C|1513
*
4WT8|1|C1|G|1570
4WT8|1|C1|G|1571
*
4WT8|1|C1|C|1592
4WT8|1|C1|C|1593

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains