J4_4WT8_016

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_016 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.128

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WT8|1|C1|G|2654
4WT8|1|C1|G|2655
4WT8|1|C1|G|2656
4WT8|1|C1|C|2657
*
4WT8|1|C1|G|2685
4WT8|1|C1|A|2686
4WT8|1|C1|C|2687
*
4WT8|1|C1|G|2743
4WT8|1|C1|G|2744
4WT8|1|C1|A|2745
4WT8|1|C1|A|2746
4WT8|1|C1|G|2747
*
4WT8|1|C1|C|2781
4WT8|1|C1|G|2782
4WT8|1|C1|C|2783

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CC

50S ribosomal protein L3

Chain CM

50S ribosomal protein L13

Chain CN

50S ribosomal protein L14