J4_4WT8_019

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4WT8|1|D1|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1315

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|D1|C|256
4WT8|1|D1|U|257
*
4WT8|1|D1|G|396
4WT8|1|D1|A|397
4WT8|1|D1|G|398
4WT8|1|D1|U|399
4WT8|1|D1|A|400
4WT8|1|D1|C|401
*
4WT8|1|D1|G|425
4WT8|1|D1|G|426
4WT8|1|D1|A|427
4WT8|1|D1|A|428
4WT8|1|D1|U|429
4WT8|1|D1|C|430
4WT8|1|D1|U|431
4WT8|1|D1|G|432
*
4WT8|1|D1|U|447
4WT8|1|D1|A|448
4WT8|1|D1|A|449
4WT8|1|D1|G|450

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DH

50S ribosomal protein L28