J4_4WT8_020

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WT8_020 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0957

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|C|320
4WT8|1|D1|G|321
4WT8|1|D1|A|322
4WT8|1|D1|A|323
4WT8|1|D1|G|324
*
4WT8|1|D1|C|339
4WT8|1|D1|G|340
4WT8|1|D1|C|341
4WT8|1|D1|C|342
*
4WT8|1|D1|G|346
4WT8|1|D1|A|347
4WT8|1|D1|G|348
*
4WT8|1|D1|C|360
4WT8|1|D1|G|361
4WT8|1|D1|U|362
4WT8|1|D1|A|363
4WT8|1|D1|G|364

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DD

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24