J4_4WU1_012

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4WU1|1|14|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WU1_012 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1818

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4WU1|1|14|C|2285
4WU1|1|14|A|2286
4WU1|1|14|A|2287
4WU1|1|14|A|2288
4WU1|1|14|G|2289
*
4WU1|1|14|C|2343
4WU1|1|14|U|2344
4WU1|1|14|G|2345
4WU1|1|14|A|2346
4WU1|1|14|C|2347
*
4WU1|1|14|G|2370
4WU1|1|14|G|2371
4WU1|1|14|G|2372
*
4WU1|1|14|C|2381
4WU1|1|14|G|2382
4WU1|1|14|G|2383

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 65

50S ribosomal protein L18

Chain E5

50S ribosomal protein L27

Chain M5

50S ribosomal protein L35