J4_4WWW_004

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4WWW|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0678

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4WWW|1|RA|C|268
4WWW|1|RA|C|269
*
4WWW|1|RA|G|370
4WWW|1|RA|A|371
4WWW|1|RA|G|372
4WWW|1|RA|U|373
4WWW|1|RA|A|374
4WWW|1|RA|G|375
*
4WWW|1|RA|U|399
4WWW|1|RA|G|400
4WWW|1|RA|A|401
4WWW|1|RA|A|402
4WWW|1|RA|U|403
4WWW|1|RA|A|404
4WWW|1|RA|U|405
4WWW|1|RA|G|406
*
4WWW|1|RA|C|421
4WWW|1|RA|A|422
4WWW|1|RA|A|423
4WWW|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L9

Chain RX

50S ribosomal protein L28