J4_4WWW_014

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0552

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4WWW|1|RA|G|2643
4WWW|1|RA|G|2644
4WWW|1|RA|G|2645
4WWW|1|RA|C|2646
*
4WWW|1|RA|G|2674
4WWW|1|RA|A|2675
4WWW|1|RA|C|2676
*
4WWW|1|RA|G|2731
4WWW|1|RA|G|2732
4WWW|1|RA|A|2733
4WWW|1|RA|A|2734
4WWW|1|RA|G|2735
*
4WWW|1|RA|U|2769
4WWW|1|RA|G|2770
4WWW|1|RA|C|2771

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L3

Chain RJ

50S ribosomal protein L13

Chain RK

50S ribosomal protein L14