J4_4WWW_015

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4WWW|1|XA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_015 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2703

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|XA|G|115
4WWW|1|XA|A|116
4WWW|1|XA|G|117
4WWW|1|XA|U|118
4WWW|1|XA|A|119
4WWW|1|XA|A|120
4WWW|1|XA|U|121
4WWW|1|XA|G|122
*
4WWW|1|XA|U|239
4WWW|1|XA|G|240
*
4WWW|1|XA|C|286
4WWW|1|XA|U|287
4WWW|1|XA|A|288
4WWW|1|XA|G|289
*
4WWW|1|XA|C|311
4WWW|1|XA|C|312

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XQ

30S ribosomal protein S17