3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4WWW|1|XA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4WWW_015 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.2703
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4WWW|1|XA|G|115
4WWW|1|XA|A|116
4WWW|1|XA|G|117
4WWW|1|XA|U|118
4WWW|1|XA|A|119
4WWW|1|XA|A|120
4WWW|1|XA|U|121
4WWW|1|XA|G|122
*
4WWW|1|XA|U|239
4WWW|1|XA|G|240
*
4WWW|1|XA|C|286
4WWW|1|XA|U|287
4WWW|1|XA|A|288
4WWW|1|XA|G|289
*
4WWW|1|XA|C|311
4WWW|1|XA|C|312

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XP
30S ribosomal protein S16
Chain XQ
30S ribosomal protein S17

Coloring options:


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