J4_4WWW_029

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4WWW|1|XA|C|183, 4WWW|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WWW_029 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.157

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4WWW|1|XA|G|142
4WWW|1|XA|A|143
4WWW|1|XA|G|144
*
4WWW|1|XA|C|178
4WWW|1|XA|A|179
4WWW|1|XA|U|180
4WWW|1|XA|A|181
4WWW|1|XA|A|182
4WWW|1|XA|C|183
4WWW|1|XA|G|184
*
4WWW|1|XA|C|193
4WWW|1|XA|C|194
4WWW|1|XA|A|195
4WWW|1|XA|A|196
4WWW|1|XA|A|197
4WWW|1|XA|G|198
*
4WWW|1|XA|U|219
4WWW|1|XA|G|220
4WWW|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20