J4_4WZO_011

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0687

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WZO|1|14|G|1772
4WZO|1|14|A|1773
4WZO|1|14|C|1774
4WZO|1|14|U|1775
4WZO|1|14|G|1776
*
4WZO|1|14|C|1788
4WZO|1|14|A|1789
4WZO|1|14|C|1790
4WZO|1|14|A|1791
4WZO|1|14|G|1792
*
4WZO|1|14|C|1827
4WZO|1|14|G|1828
4WZO|1|14|A|1829
4WZO|1|14|C|1830
*
4WZO|1|14|G|1975
4WZO|1|14|U|1976
4WZO|1|14|A|1977
4WZO|1|14|A|1978
4WZO|1|14|C|1979

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA