J4_4WZO_016

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1704

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4WZO|1|1G|G|142
4WZO|1|1G|A|143
4WZO|1|1G|G|144
*
4WZO|1|1G|C|178
4WZO|1|1G|A|179
4WZO|1|1G|U|180
4WZO|1|1G|G|181
4WZO|1|1G|U|182
4WZO|1|1G|G|183
*
4WZO|1|1G|C|194
4WZO|1|1G|A|195
4WZO|1|1G|A|196
4WZO|1|1G|A|197
4WZO|1|1G|G|198
*
4WZO|1|1G|C|219
4WZO|1|1G|G|220
4WZO|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20