J4_4WZO_027

3D structure

PDB id

4WZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-fMet and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4WZO|1|1H|A|2288, 4WZO|1|1H|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4WZO_027 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1715

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4WZO|1|1H|C|2285
4WZO|1|1H|A|2286
4WZO|1|1H|A|2287
4WZO|1|1H|A|2288
4WZO|1|1H|G|2289
*
4WZO|1|1H|C|2343
4WZO|1|1H|U|2344
4WZO|1|1H|G|2345
4WZO|1|1H|A|2346
4WZO|1|1H|C|2347
*
4WZO|1|1H|G|2370
4WZO|1|1H|G|2371
4WZO|1|1H|G|2372
*
4WZO|1|1H|C|2381
4WZO|1|1H|G|2382
4WZO|1|1H|G|2383

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27

Chain Q8

50S ribosomal protein L35