J4_4X62_002

3D structure

PDB id

4X62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4X62_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0556

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4X62|1|A|G|142
4X62|1|A|A|143
4X62|1|A|G|144
*
4X62|1|A|C|178
4X62|1|A|A|179
4X62|1|A|U|180
4X62|1|A|G|181
4X62|1|A|U|182
4X62|1|A|G|183
*
4X62|1|A|C|194
4X62|1|A|A|195
4X62|1|A|A|196
4X62|1|A|A|197
4X62|1|A|G|198
*
4X62|1|A|C|219
4X62|1|A|G|220
4X62|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20