J4_4Y4P_028

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4Y4P|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Y4P_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0963

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4Y4P|1|2a|G|142
4Y4P|1|2a|A|143
4Y4P|1|2a|G|144
*
4Y4P|1|2a|C|178
4Y4P|1|2a|A|179
4Y4P|1|2a|U|180
4Y4P|1|2a|G|181
4Y4P|1|2a|U|182
4Y4P|1|2a|G|183
*
4Y4P|1|2a|C|194
4Y4P|1|2a|A|195
4Y4P|1|2a|A|196
4Y4P|1|2a|A|197
4Y4P|1|2a|G|198
*
4Y4P|1|2a|C|219
4Y4P|1|2a|G|220
4Y4P|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20