J4_4YHH_002

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YHH_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1608

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4YHH|1|A|G|142
4YHH|1|A|A|143
4YHH|1|A|G|144
*
4YHH|1|A|C|178
4YHH|1|A|A|179
4YHH|1|A|U|180
4YHH|1|A|G|181
4YHH|1|A|U|182
4YHH|1|A|G|183
*
4YHH|1|A|C|194
4YHH|1|A|A|195
4YHH|1|A|A|196
4YHH|1|A|A|197
4YHH|1|A|G|198
*
4YHH|1|A|C|219
4YHH|1|A|G|220
4YHH|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20