J4_4YPB_002

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YPB_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1074

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4YPB|1|QA|G|142
4YPB|1|QA|A|143
4YPB|1|QA|G|144
*
4YPB|1|QA|C|178
4YPB|1|QA|A|179
4YPB|1|QA|U|180
4YPB|1|QA|G|181
4YPB|1|QA|U|182
4YPB|1|QA|G|183
*
4YPB|1|QA|C|194
4YPB|1|QA|A|195
4YPB|1|QA|A|196
4YPB|1|QA|A|197
4YPB|1|QA|G|198
*
4YPB|1|QA|C|219
4YPB|1|QA|G|220
4YPB|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20