J4_4YPB_029
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4YPB|1|YA|A|2288, 4YPB|1|YA|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4YPB_029 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.1634
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4YPB|1|YA|C|2285
4YPB|1|YA|A|2286
4YPB|1|YA|A|2287
4YPB|1|YA|A|2288
4YPB|1|YA|G|2289
*
4YPB|1|YA|C|2343
4YPB|1|YA|U|2344
4YPB|1|YA|G|2345
4YPB|1|YA|A|2346
4YPB|1|YA|C|2347
*
4YPB|1|YA|G|2370
4YPB|1|YA|G|2371
4YPB|1|YA|G|2372
*
4YPB|1|YA|C|2381
4YPB|1|YA|G|2382
4YPB|1|YA|G|2383
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain Y6
- 50S ribosomal protein L33
- Chain Y8
- 50S ribosomal protein L35
- Chain YS
- 50S ribosomal protein L18
Coloring options: