J4_4YZV_002

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4YZV_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1056

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4YZV|1|QA|G|142
4YZV|1|QA|A|143
4YZV|1|QA|G|144
*
4YZV|1|QA|C|178
4YZV|1|QA|A|179
4YZV|1|QA|U|180
4YZV|1|QA|G|181
4YZV|1|QA|U|182
4YZV|1|QA|G|183
*
4YZV|1|QA|C|194
4YZV|1|QA|A|195
4YZV|1|QA|A|196
4YZV|1|QA|A|197
4YZV|1|QA|G|198
*
4YZV|1|QA|C|219
4YZV|1|QA|G|220
4YZV|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20