J4_4Z3S_001

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4Z3S|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z3S_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0511

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4Z3S|1|1A|C|268
4Z3S|1|1A|U|269
*
4Z3S|1|1A|G|370
4Z3S|1|1A|A|371
4Z3S|1|1A|G|372
4Z3S|1|1A|U|373
4Z3S|1|1A|A|374
4Z3S|1|1A|C|375
*
4Z3S|1|1A|G|399
4Z3S|1|1A|G|400
4Z3S|1|1A|A|401
4Z3S|1|1A|A|402
4Z3S|1|1A|U|403
4Z3S|1|1A|C|404
4Z3S|1|1A|U|405
4Z3S|1|1A|G|406
*
4Z3S|1|1A|U|421
4Z3S|1|1A|A|422
4Z3S|1|1A|A|423
4Z3S|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9