J4_4Z8C_019

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4Z8C|1|2A|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_019 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0655

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4Z8C|1|2A|U|1358
4Z8C|1|2A|C|1359
*
4Z8C|1|2A|G|1383
4Z8C|1|2A|G|1384
4Z8C|1|2A|U|1385
4Z8C|1|2A|U|1386
4Z8C|1|2A|A|1387
4Z8C|1|2A|G|1388
*
4Z8C|1|2A|C|1449
4Z8C|1|2A|U|1450
*
4Z8C|1|2A|A|1642
4Z8C|1|2A|C|1643
4Z8C|1|2A|C|1644
4Z8C|1|2A|C|1645
4Z8C|1|2A|G|1646
4Z8C|1|2A|U|1647
4Z8C|1|2A|A|1648

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23