J4_4Z8C_023

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4Z8C|1|2A|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_023 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1195

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4Z8C|1|2A|C|2296
4Z8C|1|2A|A|2297
4Z8C|1|2A|A|2298
4Z8C|1|2A|A|2299
4Z8C|1|2A|G|2300
*
4Z8C|1|2A|C|2354
4Z8C|1|2A|U|2355
4Z8C|1|2A|G|2356
4Z8C|1|2A|A|2357
4Z8C|1|2A|C|2358
*
4Z8C|1|2A|G|2381
4Z8C|1|2A|G|2382
4Z8C|1|2A|G|2383
*
4Z8C|1|2A|C|2392
4Z8C|1|2A|G|2393
4Z8C|1|2A|G|2394

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2S

50S ribosomal protein L18