J4_4Z8C_029

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4Z8C_029 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1161

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4Z8C|1|1a|G|137
4Z8C|1|1a|A|138
4Z8C|1|1a|G|139
*
4Z8C|1|1a|C|173
4Z8C|1|1a|A|174
4Z8C|1|1a|U|175
4Z8C|1|1a|G|176
4Z8C|1|1a|U|177
4Z8C|1|1a|G|178
*
4Z8C|1|1a|C|201
4Z8C|1|1a|A|202
4Z8C|1|1a|A|203
4Z8C|1|1a|A|204
4Z8C|1|1a|G|205
*
4Z8C|1|1a|C|215
4Z8C|1|1a|G|216
4Z8C|1|1a|C|217

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20