J4_4ZER_021

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4ZER_021 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0468

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4ZER|1|2A|G|1772
4ZER|1|2A|A|1773
4ZER|1|2A|C|1774
4ZER|1|2A|U|1775
4ZER|1|2A|G|1776
*
4ZER|1|2A|C|1788
4ZER|1|2A|A|1789
4ZER|1|2A|C|1790
4ZER|1|2A|A|1791
4ZER|1|2A|G|1792
*
4ZER|1|2A|C|1827
4ZER|1|2A|G|1828
4ZER|1|2A|A|1829
4ZER|1|2A|C|1830
*
4ZER|1|2A|G|1975
4ZER|1|2A|U|1976
4ZER|1|2A|A|1977
4ZER|1|2A|A|1978
4ZER|1|2A|C|1979

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA