J4_5AA0_008
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5AA0|1|AA|A|2286||||P_1, 5AA0|1|AA|A|2288||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AA0_008 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.3869
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AA0|1|AA|C|2285||||P_1
5AA0|1|AA|A|2286||||P_1
5AA0|1|AA|A|2287||||P_1
5AA0|1|AA|A|2288||||P_1
5AA0|1|AA|G|2289||||P_1
*
5AA0|1|AA|C|2343||||P_1
5AA0|1|AA|U|2344||||P_1
5AA0|1|AA|G|2345||||P_1
5AA0|1|AA|A|2346||||P_1
5AA0|1|AA|C|2347||||P_1
*
5AA0|1|AA|G|2370||||P_1
5AA0|1|AA|G|2371||||P_1
5AA0|1|AA|G|2372||||P_1
*
5AA0|1|AA|C|2381||||P_1
5AA0|1|AA|G|2382||||P_1
5AA0|1|AA|G|2383||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AP
- 50S ribosomal protein L18
- Chain AX
- 50S ribosomal protein L27
- Chain Ac
- 50S ribosomal protein L33
- Chain Ae
- 50S ribosomal protein L35
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