J4_5AA0_011

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AA0_011 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.2099

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5AA0|1|BA|G|142||||P_1
5AA0|1|BA|A|143||||P_1
5AA0|1|BA|G|144||||P_1
*
5AA0|1|BA|C|178||||P_1
5AA0|1|BA|A|179||||P_1
5AA0|1|BA|U|180||||P_1
5AA0|1|BA|G|181||||P_1
5AA0|1|BA|U|182||||P_1
5AA0|1|BA|G|183||||P_1
*
5AA0|1|BA|C|194||||P_1
5AA0|1|BA|A|195||||P_1
5AA0|1|BA|A|196||||P_1
5AA0|1|BA|A|197||||P_1
5AA0|1|BA|G|198||||P_1
*
5AA0|1|BA|C|219||||P_1
5AA0|1|BA|G|220||||P_1
5AA0|1|BA|C|221||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BX

30S ribosomal protein S20