J4_5AFI_007
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AFI_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0525
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|A|A|1772||||P_1
5AFI|1|A|A|1773||||P_1
5AFI|1|A|C|1774||||P_1
5AFI|1|A|U|1775||||P_1
5AFI|1|A|G|1776||||P_1
*
5AFI|1|A|C|1788||||P_1
5AFI|1|A|A|1789||||P_1
5AFI|1|A|C|1790||||P_1
5AFI|1|A|A|1791||||P_1
5AFI|1|A|G|1792||||P_1
*
5AFI|1|A|U|1827||||P_1
5AFI|1|A|G|1828||||P_1
5AFI|1|A|A|1829||||P_1
5AFI|1|A|C|1830||||P_1
*
5AFI|1|A|G|1975||||P_1
5AFI|1|A|U|1976||||P_1
5AFI|1|A|A|1977||||P_1
5AFI|1|A|A|1978||||P_1
5AFI|1|A|U|1979||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: