J4_5AJ0_006
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ0_006 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1077
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|G|3605
5AJ0|1|A2|A|3606
5AJ0|1|A2|C|3607
5AJ0|1|A2|U|3608
5AJ0|1|A2|G|3609
*
5AJ0|1|A2|C|3621
5AJ0|1|A2|A|3622
5AJ0|1|A2|A|3623
5AJ0|1|A2|A|3624
5AJ0|1|A2|G|3625
*
5AJ0|1|A2|U|3661
5AJ0|1|A2|G|3662
5AJ0|1|A2|A|3663
5AJ0|1|A2|U|3664
5AJ0|1|A2|U|3665
*
5AJ0|1|A2|A|3792
5AJ0|1|A2|U|3793
5AJ0|1|A2|G|3794
5AJ0|1|A2|A|3795
5AJ0|1|A2|A|3796
5AJ0|1|A2|C|3797
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8
- Chain An
- 60S ribosomal protein L41
- Chain Ap
- 60S ribosomal protein L37a
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: