J4_5AKA_003

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5AKA|1|B|G|1271, 5AKA|1|B|A|1272, 5AKA|1|B|U|1273, 5AKA|1|B|A|1274, 5AKA|1|B|A|1275, 5AKA|1|B|C|1646, 5AKA|1|B|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AKA_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1643

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5AKA|1|B|C|1270
5AKA|1|B|G|1271
5AKA|1|B|A|1272
5AKA|1|B|U|1273
5AKA|1|B|A|1274
5AKA|1|B|A|1275
5AKA|1|B|A|1276
*
5AKA|1|B|U|1294
5AKA|1|B|C|1295
*
5AKA|1|B|G|1645
5AKA|1|B|C|1646
5AKA|1|B|U|1647
5AKA|1|B|U|1648
*
5AKA|1|B|A|2009
5AKA|1|B|G|2010

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain N

50S RIBOSOMAL PROTEIN L17

Chain S

50S RIBOSOMAL PROTEIN L22