J4_5AN9_001

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AACUG*CAAAG*UGAUU*AUCAAU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AN9_001 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.0951

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AN9|1|N|A|2397
5AN9|1|N|A|2398
5AN9|1|N|C|2399
5AN9|1|N|U|2400
5AN9|1|N|G|2401
*
5AN9|1|N|C|2413
5AN9|1|N|A|2414
5AN9|1|N|A|2415
5AN9|1|N|A|2416
5AN9|1|N|G|2417
*
5AN9|1|N|U|2452
5AN9|1|N|G|2453
5AN9|1|N|A|2454
5AN9|1|N|U|2455
5AN9|1|N|U|2456
*
5AN9|1|N|A|2583
5AN9|1|N|U|2584
5AN9|1|N|C|2585
5AN9|1|N|A|2586
5AN9|1|N|A|2587
5AN9|1|N|U|2588

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains