J4_5AN9_002

3D structure

PDB id

5AN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6 release from the nascent 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

5AN9|1|N|U|2580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AN9_002 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1304

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5AN9|1|N|C|2458
5AN9|1|N|U|2459
5AN9|1|N|G|2460
*
5AN9|1|N|C|2514
5AN9|1|N|G|2515
*
5AN9|1|N|C|2533
5AN9|1|N|U|2534
5AN9|1|N|U|2535
5AN9|1|N|A|2536
5AN9|1|N|A|2537
5AN9|1|N|G|2538
5AN9|1|N|G|2539
5AN9|1|N|U|2540
5AN9|1|N|A|2541
5AN9|1|N|G|2542
*
5AN9|1|N|U|2576
5AN9|1|N|G|2577
5AN9|1|N|A|2578
5AN9|1|N|A|2579
5AN9|1|N|U|2580
5AN9|1|N|G|2581

Current chains

Chain N

26S RIBOSOMAL RNA

Nearby chains

Chain J

RIBOSOME MATURATION PROTEIN SBDS