J4_5APN_007

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GACUG*CAUAG*UGAUUU*AUUAAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5APN_007 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.581

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|G|2130
5APN|1|5|A|2131
5APN|1|5|C|2132
5APN|1|5|U|2133
5APN|1|5|G|2134
*
5APN|1|5|C|2146
5APN|1|5|A|2147
5APN|1|5|U|2148
5APN|1|5|A|2149
5APN|1|5|G|2150
*
5APN|1|5|U|2186
5APN|1|5|G|2187
5APN|1|5|A|2188
5APN|1|5|U|2189
5APN|1|5|U|2190
5APN|1|5|U|2191
*
5APN|1|5|A|2317
5APN|1|5|U|2318
5APN|1|5|U|2319
5APN|1|5|A|2320
5APN|1|5|A|2321
5APN|1|5|C|2322

Current chains

Chain 5

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A