J4_5APN_012
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 5APN|1|5|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5APN_012 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.1135
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APN|1|5|C|2654
5APN|1|5|U|2655
5APN|1|5|A|2656
5APN|1|5|A|2657
5APN|1|5|G|2658
*
5APN|1|5|U|2712
5APN|1|5|U|2713
5APN|1|5|G|2714
5APN|1|5|A|2715
5APN|1|5|U|2716
*
5APN|1|5|A|2740
5APN|1|5|C|2741
5APN|1|5|C|2742
*
5APN|1|5|G|2751
5APN|1|5|U|2752
5APN|1|5|G|2753
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L42-A
Coloring options: