J4_5BR8_002

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5BR8_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0726

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5BR8|1|A|G|142
5BR8|1|A|A|143
5BR8|1|A|G|144
*
5BR8|1|A|C|178
5BR8|1|A|A|179
5BR8|1|A|U|180
5BR8|1|A|G|181
5BR8|1|A|U|182
5BR8|1|A|G|183
*
5BR8|1|A|C|194
5BR8|1|A|A|195
5BR8|1|A|A|196
5BR8|1|A|A|197
5BR8|1|A|G|198
*
5BR8|1|A|C|219
5BR8|1|A|G|220
5BR8|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20