J4_5CCX_001
3D structure
- PDB id
- 5CCX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5CCX|1|N|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5CCX_001 not in the Motif Atlas
- Homologous match to J4_5CCB_001
- Geometric discrepancy: 0.0308
- The information below is about J4_5CCB_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_82510.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5CCX|1|N|A|7
5CCX|1|N|U|8
5CCX|1|N|A|9
5CCX|1|N|G|10
*
5CCX|1|N|C|25
5CCX|1|N|A|26
5CCX|1|N|U|27
*
5CCX|1|N|A|43
5CCX|1|N|G|44
5CCX|1|N|G|45
5CCX|1|N|G|46
5CCX|1|N|U|47
5CCX|1|N|C|48
5CCX|1|N|C|49
*
5CCX|1|N|G|65
5CCX|1|N|U|66
Current chains
- Chain N
- tRNA3Lys
Nearby chains
- Chain A
- tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
- Chain B
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Coloring options: