J4_5CD1_001

3D structure

PDB id

5CD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

5CD1|1|M|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5CD1_001 not in the Motif Atlas

Homologous match to J4_5CCB_001

Geometric discrepancy: 0.1223

The information below is about J4_5CCB_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

5CD1|1|M|A|7
5CD1|1|M|U|8
5CD1|1|M|A|9
5CD1|1|M|G|10
*
5CD1|1|M|C|25
5CD1|1|M|A|26
5CD1|1|M|U|27
*
5CD1|1|M|A|43
5CD1|1|M|G|44
5CD1|1|M|G|45
5CD1|1|M|G|46
5CD1|1|M|U|47
5CD1|1|M|C|48
5CD1|1|M|C|49
*
5CD1|1|M|G|65
5CD1|1|M|U|66

Current chains

Chain M

tRNA3Lys

Nearby chains

Chain E

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6