J4_5CZP_002

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5CZP|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5CZP_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0865

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5CZP|1|QA|G|142
5CZP|1|QA|A|143
5CZP|1|QA|G|144
*
5CZP|1|QA|C|178
5CZP|1|QA|A|179
5CZP|1|QA|U|180
5CZP|1|QA|G|181
5CZP|1|QA|U|182
5CZP|1|QA|G|183
*
5CZP|1|QA|C|194
5CZP|1|QA|A|195
5CZP|1|QA|A|196
5CZP|1|QA|A|197
5CZP|1|QA|G|198
*
5CZP|1|QA|C|219
5CZP|1|QA|G|220
5CZP|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20