J4_5D8B_006
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5D8B|1|UC|G|576, 5D8B|1|UC|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5D8B_006 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0774
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5D8B|1|UC|G|575
5D8B|1|UC|G|576
5D8B|1|UC|G|577
*
5D8B|1|UC|C|764
5D8B|1|UC|G|765
5D8B|1|UC|A|766
5D8B|1|UC|A|767
5D8B|1|UC|A|768
5D8B|1|UC|G|769
*
5D8B|1|UC|C|810
5D8B|1|UC|C|811
5D8B|1|UC|C|812
5D8B|1|UC|U|813
5D8B|1|UC|A|814
5D8B|1|UC|A|815
5D8B|1|UC|A|816
5D8B|1|UC|C|817
5D8B|1|UC|G|818
5D8B|1|UC|A|819
5D8B|1|UC|U|820
5D8B|1|UC|G|821
*
5D8B|1|UC|C|879
5D8B|1|UC|C|880
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain IA
- 30S ribosomal protein S8
- Chain MA
- 30S ribosomal protein S12
- Chain PA
- 30S ribosomal protein S15
- Chain RA
- 30S ribosomal protein S17
- Chain VC
- Large subunit ribosomal RNA; LSU rRNA
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