J4_5D8B_032

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5D8B_032 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1114

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5D8B|1|ZC|G|2643
5D8B|1|ZC|G|2644
5D8B|1|ZC|G|2645
5D8B|1|ZC|C|2646
*
5D8B|1|ZC|G|2674
5D8B|1|ZC|A|2675
5D8B|1|ZC|C|2676
*
5D8B|1|ZC|G|2731
5D8B|1|ZC|G|2732
5D8B|1|ZC|A|2733
5D8B|1|ZC|A|2734
5D8B|1|ZC|G|2735
*
5D8B|1|ZC|C|2769
5D8B|1|ZC|G|2770
5D8B|1|ZC|C|2771

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain DB

50S ribosomal protein L13

Chain EB

50S ribosomal protein L14

Chain XA

50S ribosomal protein L3